Changes between Version 10 and Version 11 of FAQ


Ignore:
Timestamp:
09/03/21 10:49:56 (3 years ago)
Author:
gbell
Comment:

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  • FAQ

    v10 v11  
    209209    * eg. bsub bash -c "tophat -p 10 -g 1 -o mapped_data_SRR905147_unique -N 2 -I 10000 --segment-length 25 --segment-mismatches 2 hg19 <(tar xvzfO s_2_1_sequence.txt.tar.gz ACTTGA-s_2_1_sequence.txt) <(tar xvzfO CAGATC-s_2_1_sequence.txt.tar.gz CAGATC-s_2_1_sequence.txt)"
    2102101. [=#alphafold How can I run '''AlphaFold 2.0''' here at Whitehead?]
    211   * Log on to tempest.wi.mit.edu -- ask IT if your account doesn't allow you to do this.
    212     * ssh -Y USERNAME@tempest
     211  * You'll need access to a system with a GPU, or the new GPU queue.  IT can help you choose and obtain access to GPU systems if required.
    213212  * Modify the environment with a path to the required data:
    214213    * export ALPHAFOLD_DATA_PATH=/alphafold/data