Changes between Version 21 and Version 22 of FAQ

Timestamp:

03/13/23 14:31:35 (23 months ago)

Author:

gbell

Comment:

--

FAQ

@@ -209 +209 @@
   * bsub bash -c "tophat ... <(tar xvzfO ...) <(tar xvzfO ...)", this is using process substitution 
     * eg. bsub bash -c "tophat -p 10 -g 1 -o mapped_data_SRR905147_unique -N 2 -I 10000 --segment-length 25 --segment-mismatches 2 hg19 <(tar xvzfO s_2_1_sequence.txt.tar.gz ACTTGA-s_2_1_sequence.txt) <(tar xvzfO CAGATC-s_2_1_sequence.txt.tar.gz CAGATC-s_2_1_sequence.txt)"
-1. [=#alphafold How can I run '''AlphaFold 2.0-2.2''' here at Whitehead?]
+1. [=#alphafold How can I run '''AlphaFold 2.2''' here at Whitehead?]
   * You'll need access to a system with a GPU, or the new GPU queue.  IT can help you choose and obtain access to GPU systems if required.
   * For a working command to be executed on fry.wi.mit.edu, which then sends the AlphaFold command to the GPU node on the slurm cluster, see /nfs/BaRC_Public/BaRC_code/shell/run_AlphaFold/Commands.sh