Changes between Version 26 and Version 27 of FAQ

Timestamp:

04/23/24 14:56:39 (4 weeks ago)

Author:

xinlei.gao

Comment:

--

FAQ

@@ -245 +245 @@
   * For example, to load Seurat version 4, use this command:
 {{{
-require(Seurat, lib.loc="/nfs/apps/lib/R/4.2-focal/site-library.2023q1/")
+library(irlba, lib.loc = "/nfs/apps/lib/R/4.2-focal/site-library.2023q4") # the 'irlba' package is required by Seurat for linear algebra
+library(Seurat, lib.loc = "/nfs/apps/lib/R/4.2-focal/site-library.2023q1")
 }}}
   * This command directs R to use a specific library path where Seurat version 4 is installed, ensuring compatibility with older datasets or software requirements.
-  * However, sometimes Seurat may depend on other R packages to run certain functions, in that case, only loading the older version of Seurat may not work. Instead, we could explicitly load all R packages from the last R library set to keep the packages compatible.
+  * Alternatively, we could explicitly load all R packages from the last R library set to keep the package versions consistent and compatible.
 {{{
 set_lib_paths <- function(lib_vec) {
@@ -269 +270 @@
 
 
+