Changes between Version 3 and Version 4 of FAQ

Timestamp:

03/11/20 15:40:04 (5 years ago)

Author:

gbell

Comment:

--

FAQ

@@ -67 +67 @@
   * You need a MySQL client to access the database, either a desktop tool like [http://wb.mysql.com/ MySQL Workbench] or a tak account.
   * The information you need: 
-       * Hostname = canna.wi.mit.edu
+       * Hostname = devo.wi.mit.edu
        * database = entrez_gene
-       * username = entrezgene
-       * password = wibr
+       * username = barc_read_only
+       * password = Ask BaRC about this 
   * On tak, use the command
-       * mysql -u entrezgene -h canna.wi.mit.edu -D entrez_gene -p[[br]] [[br]]
+       * mysql -u barc_read_only -h devo.wi.mit.edu -D entrez_gene -p[[br]] [[br]]
 1. [=#hottopics How can I find slides and materials from '''past Hot Topics talks'''?] [[br]] [[br]]
-  * See our [http://jura.wi.mit.edu/bio/education/hot_topics/ Hot Topics ] page, with links to presentations and other materials.[[br]] [[br]]
+  * See our [http://barc.wi.mit.edu/education/hot_topics/ Hot Topics ] page, with links to presentations and other materials.[[br]] [[br]]
 1. [=#relational How can I '''create my own relational database'''?] [[br]] [[br]]
   * You have the choice of creating a MySQL on your own computer or using Whitehead's MySQL server (canna, which would generally be more robust, if that's needed).
   * If you'd like your own installation, download [http://dev.mysql.com/downloads/mysql/ MySQL] and install it.
-  * If you'd like to use canna, email unix-help@wi.mit.edu and request a database on canna.  Once the IT group creates the database, you will be free to add tables and data.
+  * If you'd like to use devo, email callcenter@wi.mit.edu and request a database on devo.  Once the IT group creates the database, you will be free to add tables and data.
   * Regardless of the system see the [http://dev.mysql.com/doc/refman/5.5/en/index.html MySQL Reference Manual] and our past BaRC presentations about MySQL
       * [http://barc.wi.mit.edu/education/bioinfo2006/db4bio/ Relational Databases For Biologists]
@@ -97 +97 @@
    * In addition, see the tutorial created by IT called [http://wi-inside.wi.mit.edu/departments/it/services/scientificcomputing/scitutorials Getting Started with the LSF Cluster][[br]] [[br]]
 1. [=#perlR How can I find out what '''Perl modules or R packages''' are installed?] Which version is currently installed in the server? [[br]] [[br]]
-  * There are links on [http://tak/trac/wiki the home page] of Trac, our Tak tracking system to [http://tak/trac/wiki/Packages installed packaged software], [http://tak/trac/wiki/Perl installed Perl modules], [http://tak/trac/wiki/Python installed Python modules], and [http://tak/trac/wiki/R installed R modules]. [[br]] [[br]]
+  * There are links on [https://trac.wi.mit.edu/wiki the home page] of Trac, our Tak tracking system to [http://tak/trac/wiki/Packages installed packaged software], [http://tak/trac/wiki/Perl installed Perl modules], [http://tak/trac/wiki/Python installed Python modules], and [http://tak/trac/wiki/R installed R modules]. [[br]] [[br]]
 1.  [=#xwindow  How can I '''connect to tak'''?][[br]] [[br]]
   * To connect to tak, you need a [http://bioinfo.wi.mit.edu/bio/software/unix/bioinfoaccount.php tak account] and some kind of secure shell (ssh) with X Windows (to get the graphics):
@@ -143 +143 @@
   * It used to be at [https://galaxy.wi.mit.edu/] but we no longer provide Galaxy.  [[br]] [[br]]
 1. [=#rstudio Where can I '''find R Studio on tak'''?][[br]] [[br]]
-  * [https://tak.wi.mit.edu/rstudio/]  [[br]] [[br]]
+  * [https://rstudio.wi.mit.edu]  [[br]] [[br]]
 1. [=#IGV Where can I '''find IGV download'''?] [[br]] [[br]]
   * [http://www.broadinstitute.org/software/igv/log-in][[br]] [[br]]