Changes between Version 22 and Version 23 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
08/16/17 12:50:40 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v22 v23  
    4747  * '''--genomeDir </path/to/GenomeDir>'''  Specifies the path to the directory used for storing the genome information created in the genomeGenerate step.
    4848  * '''--genomeFastaFiles <genome FASTA files>''' Specifies genome FASTA files to be used.
     49  * '''--sjdbFileChrStartEnd <output from first pass>  '''  path to the file with genomic coordinates for introns
    4950  * '''--readFilesIn <read1.fastq read2.fastq> ''' Specifies the fastq files containing the reads, can be single-end or paired-end.
    5051  * '''--runThreadN <n> ''' Specifies the number of threads to use.