Changes between Version 23 and Version 24 of SOP/CallingVariantsRNAseq

Timestamp:

08/16/17 12:53:10 (8 years ago)

Author:

krichard

Comment:

--

SOP/CallingVariantsRNAseq

@@ -52 +52 @@
 
 
+To map:
+    '''Run this command within the SecondPass directory'''
+{{{
+Input format: fastq ; output format: SAM
+bsub STAR --genomeDir /path/to/GenomeDir2nd --readFilesIn /path/to/read1.fastq  --outFileNamePrefix whateverPrefix --runThreadN 8
+}}}
 
+
+