Changes between Version 2 and Version 3 of SOP/CallingVariantsRNAseq


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Timestamp:
08/15/17 09:50:09 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v2 v3  
    1 === Notes on calling variants with GATK ===
     1=== Notes on calling variants in RNA-seq data with GATK ===
    22
    33* RNAseq includes reads mapped across splice junctions and is associated with high variability of coverage, so typical variant calling pipelines (for DNA) can lead to lots of false positives and negatives.