Changes between Version 36 and Version 37 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
08/16/17 13:38:30 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v36 v37  
    6565'''2 - Replace ReadGroups, mark duplicate reads , clip intron overhangs and  reassign mapping qualities with[http://broadinstitute.github.io/picard/ Picard Tools]'''
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     67    {{{java -jar /usr/local/share/picard-tools/picard.jar AddOrReplaceReadGroups I=output.sam O=rg_added_sorted.bam SO=coordinate RGID=ID_NAME RGLB=library RGPL=illumina RGPU=identifier RGSM=sample_name}}}