Changes between Version 39 and Version 40 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
08/16/17 13:41:18 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v39 v40  
    6868 Note, if you are combining multiple experiments in this step the RGSM IDs must be the same while the library IDs must be unique. 
    6969
    70   {{{java -jar /usr/local/share/picard-tools/picard.jar AddOrReplaceReadGroups I=output.sam O=rg_added_sorted.bam SO=coordinate RGID=ID_NAME RGLB=library RGPL=illumina RGPU=identifier RGSM=sample_name}}}
     70 {{{java -jar /usr/local/share/picard-tools/picard.jar AddOrReplaceReadGroups I=output.sam O=rg_added_sorted.bam SO=coordinate RGID=ID_NAME RGLB=library RGPL=illumina RGPU=identifier RGSM=sample_name}}}