Changes between Version 42 and Version 43 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
08/16/17 13:47:02 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v42 v43  
    7070 {{{java -jar /usr/local/share/picard-tools/picard.jar AddOrReplaceReadGroups I=output.sam O=rg_added_sorted.bam SO=coordinate RGID=ID_NAME RGLB=library RGPL=illumina RGPU=identifier RGSM=sample_name}}}
    7171
    72 '''Mark duplicate reads'''
     72'''Mark duplicate reads'''.
    7373 
    7474{{{java -jar /usr/local/share/picard-tools/picard.jar MarkDuplicates I=rg_added_sorted.bam O=dedupped.bam CREATE_INDEX=true VALIDATION_STRINGENCY=SILENT M=output.metrics}}}