Changes between Version 43 and Version 44 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
08/16/17 13:47:18 (7 years ago)
Author:
krichard
Comment:

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Legend:

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  • SOP/CallingVariantsRNAseq

    v43 v44  
    7171
    7272'''Mark duplicate reads'''.
     73
    7374 
    74 {{{java -jar /usr/local/share/picard-tools/picard.jar MarkDuplicates I=rg_added_sorted.bam O=dedupped.bam CREATE_INDEX=true VALIDATION_STRINGENCY=SILENT M=output.metrics}}}
     75 {{{java -jar /usr/local/share/picard-tools/picard.jar MarkDuplicates I=rg_added_sorted.bam O=dedupped.bam CREATE_INDEX=true VALIDATION_STRINGENCY=SILENT M=output.metrics}}}