Changes between Version 54 and Version 55 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
09/06/17 07:38:30 (7 years ago)
Author:
krichard
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SOP/CallingVariantsRNAseq

    v54 v55  
    2525{{{
    2626
    27 bsub STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDirFirstPass --genomeFastaFiles /path/to/genome/fasta1 --sjdbGTFfile /path/to/GTF/FileName.gtf --sjdbOverhang 100 --runThreadN 8
     27bsub STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDirFirstPass --genomeFastaFiles /path/to/genome/fasta --sjdbGTFfile /path/to/GTF/FileName.gtf --sjdbOverhang 100 --runThreadN 8
    2828}}}
    2929
    … …  
    4141{{{
    4242
    43 bsub STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDirSecondPass --genomeFastaFiles /path/to/genome/fasta1 --sjdbFileChrStartEnd /path/to/first/pass/directory/SJ.out.tab --sjdbGTFfile /path/to/GTF/FileName.gtf --sjdbOverhang 100 --runThreadN 8
     43bsub STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDirSecondPass --genomeFastaFiles /path/to/genome/fasta --sjdbFileChrStartEnd /path/to/first/pass/directory/SJ.out.tab --sjdbGTFfile /path/to/GTF/FileName.gtf --sjdbOverhang 100 --runThreadN 8
    4444}}}
    4545