Changes between Version 61 and Version 62 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
09/06/17 08:17:38 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v61 v62  
    1010This example pipeline starts with a single-end short-read fastq file (Reads_1.fq).
    1111\\ \\
    12 Note that '''GATK requires Java 1.7''' (so you may need to adjust your path to point to that version, if an older version is the default).\\
     12Note that '''GATK requires Java 1.8'' (so you may need to adjust your path to point to that version, if an older version is the default).\\
    1313For example, this can be added to ~/.bashrc: \\
    14 export PATH=/usr/lib/jvm/java-7-openjdk-amd64/bin:$PATH
     14export PATH=/path/to/java:$PATH
    1515\\ \\
    1616