Changes between Version 65 and Version 66 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
09/06/17 10:09:39 (7 years ago)
Author:
gbell
Comment:

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  • SOP/CallingVariantsRNAseq

    v65 v66  
    1010This example pipeline starts with a single-end short-read fastq file (Reads_1.fq).
    1111\\
    12 Note that GATK requires Java 1.8 (so you may need to adjust your path to point to that version, if an older version is the default).\\
     12Note that GATK (versions 3.7 and 3.8) requires Java 1.8 (so you may need to adjust your path to point to that version, if an older version is the default).\\
    1313For example, this can be added to ~/.bashrc: \\
    1414export PATH=/path/to/java:$PATH