Changes between Version 8 and Version 9 of SOP/CallingVariantsRNAseq


Ignore:
Timestamp:
08/16/17 12:27:45 (7 years ago)
Author:
krichard
Comment:

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  • SOP/CallingVariantsRNAseq

    v8 v9  
    1818To generate genome index files for STAR:
    1919{{{
     20       '' Run this command within the "FirstPass" directory:'' ''''''
    2021bsub STAR --runMode genomeGenerate --genomeDir /path/to/GenomeDir --genomeFastaFiles /path/to/genome/fasta1 /path/to/genome/fasta2 --sjdbGTFfile /path/to/GTF/FileName.gtf --sjdbOverhang 100 --runThreadN 8
    2122}}}