Changes between Version 13 and Version 14 of SOP/PatternsMotifs


Ignore:
Timestamp:
07/28/16 12:50:32 (9 years ago)
Author:
gbell
Comment:

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  • SOP/PatternsMotifs

    v13 v14  
    3030== Search with a custom profile (a probability matrix, with choices at all positions) ==
    3131
    32 These searches are generally a two-step process, one step to create the motif and one step to search with it.  There are several choices of detailed options, so check out the documentation.
     32These searches are generally a two-step process, one step to create the motif and one step to search with it.  There are several choices of detailed options, so check out the documentation.  You need to [http://barcwiki/wiki/SOPs/multipleSequenceAlignment align your sequences] before you can create a profile.
    3333
    3434[http://emboss.sourceforge.net/apps/cvs/emboss/apps/prophecy.html prophecy] + [http://emboss.sourceforge.net/apps/cvs/emboss/apps/profit.html profit] (EMBOSS suite) - for proteins