Changes between Version 16 and Version 17 of SOP/PatternsMotifs


Ignore:
Timestamp:
08/25/17 10:16:11 (7 years ago)
Author:
krichard
Comment:

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  • SOP/PatternsMotifs

    v16 v17  
    4848[http://jaspar.genereg.net/ JASPAR] - for transcription factor binding sites
    4949
    50 == Search with a dataset of profiles ==
    51 
    5250[http://meme-suite.org/doc/meme-format.html/ MEME Suite] For protein binding motifs
    5351 * Build a PWM from a series of aligned sequences using the [http://meme-suite.org/tools/mem/ meme] command
    … …  
    7270   -ev:           MAST only displays sequences matching your query with E-values below the given threshold you specify here. By default, sequences in the database with matches with E-values less than 10 are displayed. If your motifs are very short or have low information content (are not very specific), it may be impossible for any sequence to achieve a low E-value.\\
    7371
     72== Search with a dataset of profiles ==
    7473
    7574[http://jaspar.genereg.net/ JASPAR] - for transcription factor binding sites