Changes between Version 4 and Version 5 of SOP/PatternsMotifs


Ignore:
Timestamp:
07/22/16 10:38:27 (8 years ago)
Author:
gbell
Comment:

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  • SOP/PatternsMotifs

    v4 v5  
    4040{{{
    4141# Create a HMM from an aligned set of proteins or nucleic acids (fasta or other common format)
    42 hmmbuild Aligned_protein_sites.hmm Aligned_protein_sites.fa
     42hmmbuild MyProfile.hmm Aligned_protein_sites.fa
    4343# Use the HMM to search a fasta file of proteins
    44 hmmsearch Aligned_protein_sites.hmm Protein_set.fa
     44hmmsearch MyProfile.hmm Protein_set.fa > Protein_set.MyProfile.hmmsearch_out.txt
    4545}}}