Changes between Version 22 and Version 23 of SOP/PooledCRISPR


Ignore:
Timestamp:
08/02/22 08:56:28 (3 years ago)
Author:
byuan
Comment:

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  • SOP/PooledCRISPR

    v22 v23  
    4949* Also print out most prevalent n-mers that are not in CRISPR guide list (for quality control).
    5050* See /nfs/BaRC_Public/BaRC_code/Perl/read_count_CRISPR_guides for this implementation.
     51* If you have low amount of reads assigned to guides, the guides could be in a opposite strand. You can re-map with reverse and compliment of the guides.
    5152
    5253'''Implementation 2: If you cannot access to the script in the above folder, you can use bowtie to do the alignment'''