Changes between Version 2 and Version 3 of SOP/scRNA-seq/Slingshot


Ignore:
Timestamp:
10/13/20 13:26:08 (4 years ago)
Author:
byuan
Comment:

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  • SOP/scRNA-seq/Slingshot

    v2 v3  
    1717== Calculate pseudotime and lineages with Slingshot ==
    1818
    19   You can use either PCA/UMAP/TSNE for reduction. Since Slingshot is designed for cases in which cells fall along a continuous trajectory, it's better to use PCA if clearly discrete clusters in UMAP, as mentioned in [https://github.com/kstreet13/slingshot/issues/43 | Slingshot github page]
     19  You can use either PCA/UMAP/TSNE for reduction. Since Slingshot is designed for cases in which cells fall along a continuous trajectory, it's better to use PCA if clearly discrete clusters presented in UMAP, as mentioned in [https://github.com/kstreet13/slingshot/issues/43 | Slingshot github page]
    2020
    2121{{{