Changes between Version 14 and Version 15 of SOP/scRNA-seq

Timestamp:

07/17/20 09:51:58 (4 years ago)

Author:

gbell

Comment:

--

SOP/scRNA-seq

@@ -62 +62 @@
   * aggregate counts across all cells in a group/cluster, and treat them as one sample
 
+=== Add biological annotations to cells or cell clusters  ===
+
+Drawing biological conclusions from a single-cell experiment usually requires that one classify cells (or at least cell clusters) by type.  Traditionally this is a time-consuming process of exploring marker genes and manually assigning cell type to each numbered cluster.  Given that a number of public scRNA-seq experiments already have these annotations, one can leverage automated software with these ideally "gold standard" datasets to classify current experiments, either via expression profiles or marker genes.
+
 
 === Perform trajectory analysis ===