Changes between Version 18 and Version 19 of SOP/scRNA-seq

Timestamp:

08/07/20 10:19:21 (5 years ago)

Author:

twhitfie

Comment:

--

SOP/scRNA-seq

@@ -143 +143 @@
 all <- RunUMAP(all, dims = 1:ncol(all[["iNMF"]]), reduction = "iNMF")
 
-# The commands above use default values for the default values for the rank, k, of the NMF and the homogeneity parameter, lambda. 
-# Generally, the rank should be chosen to be large enough to capture structure in the data matrix, yet small enough that the factorization
-# gives reproducible interpretations under multiple non-unique solutions. Increasing the homogeneity parameter places greater emphasis
-# on the common factors in the integration.  The heuristic functions suggestK and suggestLambda can be used to guide the data-set-specific
+# The commands above use default values for the rank, k, of the NMF and the homogeneity parameter, lambda. Generally, the rank
+# should be chosen to be large enough to capture structure in the data matrix, yet small enough that the factorization gives reproducible
+# interpretations under multiple non-unique solutions. Increasing the homogeneity parameter places greater emphasis on the common
+# factors in the integration.  The heuristic functions suggestK and suggestLambda can be used to guide the data-set-specific
 # adjustment of these two parameters. 
 }}}