Changes between Version 5 and Version 6 of SOPs/AlphaFold

Timestamp:

04/23/24 06:18:51 (9 months ago)

Author:

twhitfie

Comment:

--

SOPs/AlphaFold

@@ -13 +13 @@
  
 {{{
-sbatch --export=ALL,FASTA_NAME=example.fa,USERNAME='user',FASTA_PATH=proteins,AF2_WORK_DIR=/path/to/working/directory ./RunAlphaFold_2.3.2_slurm.sh
+sbatch --export=ALL,FASTA_NAME=example.fa,USERNAME='user',FASTA_PATH=/path/to/fasta/file,AF2_WORK_DIR=/path/to/working/directory ./RunAlphaFold_2.3.2_slurm.sh
 }}}
 
-In this example, the job that is submitted to the SLURM scheduler might look like:
+In the command above, substitute your own user id, fasta file and the paths to both the fasta file and the working directory.  In this example, the job that is submitted to the SLURM scheduler might look like:
 
 {{{