Changes between Version 3 and Version 4 of SOPs/Hi-C


Ignore:
Timestamp:
11/17/20 15:39:33 (4 years ago)
Author:
twhitfie
Comment:

--

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  • SOPs/Hi-C

    v3 v4  
    1010=== [=#SetConfig Set up the configuration file] ===
    1111
    12   * The configuration file (here called config.txt) dictates essential settings for the analysis.  In this example, human samples have been sequenced and an e-mail will be sent to "user@wi.mit.edu" on job completion.
     12  * The configuration file (here called config.txt) dictates essential settings for the analysis.  In this example, human samples have been sequenced and an e-mail will be sent to "user at wi.mit.edu" on job completion.
    1313
    1414{{{
    … …  
    7272#######################################################################
    7373
    74 GENOME_FRAGMENT = /nfs/genomes/arimaCutsites/hg38_GATC_GANTC.bed
     74GENOME_FRAGMENT = /nfs/genomes/human_hg38_dec13/arima/hg38_GATC_GANTC.bed
    7575LIGATION_SITE = GAATAATC,GAATACTC,GAATAGTC,GAATATTC,GAATGATC,GACTAATC,GACTACTC,GACTAGTC,GACTATTC,GACTGATC,GAGTAATC,GAGTACTC,GAGTAGTC,GAGTATTC,GAGTGATC,GATCAATC,GATCACTC,GATCAGTC,GATCATTC,GATCGATC,GATTAATC,GATTACTC,GATTAGTC,GATTATTC,GATTGATC
    7676MIN_FRAG_SIZE = 10