Changes between Version 21 and Version 22 of SOPs/InProgress


Ignore:
Timestamp:
05/14/14 10:08:19 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/InProgress

    v21 v22  
    11== Get reproducible peaks from multiple ChIP-seq replicates with IDR (after using macs for peak calling) ==
    22
    3 For more information about the method, see the main [[https://sites.google.com/site/anshulkundaje/projects/idr IDR page]]
     3For more information about the method, see the main [[https://sites.google.com/site/anshulkundaje/projects/idr| IDR page]].
    44
    55=== Run macs2 (macs version 2, not version 1) to call ChIP-seq peaks.  Adjust fragment length with --nomodel --shiftsize if NSC/RSC plots are not good ===