Changes between Version 22 and Version 23 of SOPs/InProgress


Ignore:
Timestamp:
05/14/14 10:08:54 (11 years ago)
Author:
gbell
Comment:

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  • SOPs/InProgress

    v22 v23  
    33For more information about the method, see the main [[https://sites.google.com/site/anshulkundaje/projects/idr| IDR page]].
    44
    5 === Run macs2 (macs version 2, not version 1) to call ChIP-seq peaks.  Adjust fragment length with --nomodel --shiftsize if NSC/RSC plots are not good ===
     5=== Run macs2 (macs version 2, not version 1) to call ChIP-seq peaks. ===
    66
    77The IDR analysis requires that you call lots of peaks, including all "good" ones and some that are just noise.
     8
     9Adjust the fragment length with --nomodel --shiftsize if NSC/RSC plots are not good.
    810
    911{{{