Changes between Version 1 and Version 2 of SOPs/Using


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Timestamp:
01/05/18 13:13:50 (7 years ago)
Author:
ibarrasa
Comment:

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  • SOPs/Using

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    11== Using ngsplot to make stacked heatmaps and profiles of genes or genomic regions (like ChIP-seq peaks) ==
    22 [[https://github.com/shenlab-sinai/ngsplot | ngsplot]] is a great tool to make heatmaps and profiles of mapped reads (i.e. bam files of RNA-seq, ChIP-seq etc) across genes, transcription starts sites or other regions of interest.
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     3 The regions used can be genes included on the ngsplot annotation or custom regions included on a bed file.
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     5== Here is an example of a ngsplot command using custom reagions ==
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     7== Using ngsplot to make stacked heatmaps and profiles of genes or genomic regions (like ChIP-seq peaks) ==
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