Changes between Version 2 and Version 3 of SOPs/Using

Timestamp:

01/05/18 13:38:00 (7 years ago)

Author:

ibarrasa

Comment:

--

SOPs/Using

@@ -3 +3 @@
  The regions used can be genes included on the ngsplot annotation or custom regions included on a bed file.
 
-== Here is an example of a ngsplot command using custom reagions ==
+* Here is an example of a ngsplot command using custom regions
+{{{
+        bsub ngs.plot.r -G hg19 -R bed -L 3000 -C config.txt -O Peak_Summits
 
-== Using ngsplot to make stacked heatmaps and profiles of genes or genomic regions (like ChIP-seq peaks) ==
+        * Example of the tab delimited config.txt file
+
+         TF1.sorted.bam       peaks.SUMMIT.bed  "TF1" 
+         TF2.sorted.bam       peaks.SUMMIT.bed  "TF2" 
+         Pol2.sorted.bam      peaks.SUMMIT.bed  "Pol2" 
+}}}
+* Here is an example of a ngsplot command using gene annotations within the ngsplot package
+
+{{{
+
+}}}