Changes between Version 3 and Version 4 of SOPs/Using


Ignore:
Timestamp:
01/05/18 13:45:20 (7 years ago)
Author:
ibarrasa
Comment:

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  • SOPs/Using

    v3 v4  
    11== Using ngsplot to make stacked heatmaps and profiles of genes or genomic regions (like ChIP-seq peaks) ==
    2  [[https://github.com/shenlab-sinai/ngsplot | ngsplot]] is a great tool to make heatmaps and profiles of mapped reads (i.e. bam files of RNA-seq, ChIP-seq etc) across genes, transcription starts sites or other regions of interest.
     2 [[https://github.com/shenlab-sinai/ngsplot/wiki | ngsplot]] is a great tool to make heatmaps and profiles of mapped reads (i.e. bam files of RNA-seq, ChIP-seq etc) across genes, transcription starts sites or other regions of interest.
    33 The regions used can be genes included on the ngsplot annotation or custom regions included on a bed file.
    44