Changes between Version 4 and Version 5 of SOPs/Using

Timestamp:

04/08/20 13:00:30 (5 years ago)

Author:

thiruvil

Comment:

--

SOPs/Using

@@ -16 +16 @@
 
 {{{
+#using transcription start sites (tss)
+bsub ngs.plot.r -G hg19 -R tss -L 3000 -C config.txt -O ngsplot_tss
+
+#using gene body
+bsub ngs.plot.r -G hg19 -R genebody -L 3000 -C config.txt -O ngsplot_tss
 
 }}}
 
+ngsplot uses a two-step normalization: i) coverage vectors' length i.e. gene length and ii) library size.
+[[https://github.com/shenlab-sinai/ngsplot/wiki/HowAreYaxisValsCalculated | ngsplot: How Are Y-axis Vals Calculated]]
 
+