Changes between Version 6 and Version 7 of SOPs/Using


Ignore:
Timestamp:
04/12/22 13:56:28 (3 years ago)
Author:
thiruvil
Comment:

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  • SOPs/Using

    v6 v7  
    2222# Using gene bodies as the features of interest
    2323bsub ngs.plot.r -G hg19 -R genebody -L 3000 -C config.txt -O ngsplot_tss
     24# Note: ngsplot genebody does not include introns when specifying -R genebody
     25}}}
    2426
    25 }}}
     27
     28* For plotting RNA-Seq data with ngsplot, use ''-F rnaseq'' mode/option
    2629
    2730ngsplot uses a two-step normalization: i) coverage vectors' length i.e., gene length and ii) library size.