Changes between Version 8 and Version 9 of SOPs/Using


Ignore:
Timestamp:
10/28/25 15:54:00 (12 hours ago)
Author:
kdesilva
Comment:

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  • SOPs/Using

    v8 v9  
    77
    88{{{
    9 bsub ngs.plot.r -G hg19 -R bed -L 3000 -C config.txt -O Peak_Summits
     9sbatch --partition=20 --job-name=ngsplot --mem=16G --wrap "ngs.plot.r -G hg19 -R bed -L 3000 -C config.txt -O Peak_Summits"
    1010
    1111using this example of the tab delimited config.txt file:
    … …  
    2020{{{
    2121# Using transcription start sites (tss) as the features of interest
    22 bsub ngs.plot.r -G hg19 -R tss -L 3000 -C config.txt -O ngsplot_tss
     22sbatch --partition=20 --job-name=ngsplot --mem=16G --wrap "ngs.plot.r -G hg19 -R tss -L 3000 -C config.txt -O ngsplot_tss"
    2323
    2424# Using gene bodies as the features of interest
    25 bsub ngs.plot.r -G hg19 -R genebody -L 3000 -C config.txt -O ngsplot_tss
     25sbatch --partition=20 --job-name=ngsplot --mem=16G --wrap "ngs.plot.r -G hg19 -R genebody -L 3000 -C config.txt -O ngsplot_tss"
    2626# Note: ngsplot genebody does not include introns when specifying -R genebody
    2727}}}