Changes between Version 112 and Version 113 of SOPs/atac_Seq

Timestamp:

11/08/24 14:35:16 (2 months ago)

Author:

ibarrasa

Comment:

--

SOPs/atac_Seq

@@ -304 +304 @@
 {{{
 sbatch --partition=20 --job-name=NextF_ATACmcas2ConfigFull --output=NextF_ATAC_macs2ConfigFull-%j.out  --mem=200gb   --nodes=1 --ntasks=1 --cpus-per-task=20 --wrap \
- "nextflow run nf-core/atacseq    -profile singularity  -c  ./macs2Custom.config --input ./atacseq_sampleSheetFullFastq.csv  --min_trimmed_reads  0  --aligner bowtie2  --keep_dups TRUE  --narrow_peak TRUE  --email 'username@wi.mit.edu' --genome  mm10 --read_length 50  --outdir  ./OutNextF_ATAC"
+ "nextflow run nf-core/atacseq    -profile singularity  -c  ./macs2Custom.config --input ./atacseq_sampleSheetFullFastq.csv  --min_trimmed_reads  0  --aligner bowtie2 \
+ --keep_dups TRUE  --narrow_peak TRUE  --email 'username@wi.mit.edu' --genome  mm10 --read_length 50  --outdir  ./OutNextF_ATAC"
 }}}