Changes between Version 30 and Version 31 of SOPs/atac_Seq

Timestamp:

10/27/20 14:49:18 (4 years ago)

Author:

byuan

Comment:

--

SOPs/atac_Seq

@@ -80 +80 @@
 The [https://www.encodeproject.org/atac-seq/#standards ENCODE project] has some recommended TSS enrichment scores, depending on the genome.
 
-In addition to do varies quality controls, [ https://www.sciencedirect.com/science/article/pii/S240547122030079X ataqv ] summarizes QC results into an interactive html page, which also allows you to view multiple samples together. 
+In addition to do varies quality controls, [[https://www.sciencedirect.com/science/article/pii/S240547122030079X | ataqv]] summarizes QC results into an interactive html page, which also allows you to view multiple samples together. 
 
 First, run ataqv on each bam file to generate JSON files.
@@ -103 +103 @@
 
 
-Run mkarv on the JSON files to generate the interactive web viewer. By default, SRR891268 will be used as the reference sample in the viewer. You can specify a different reference when you built your viewer instance, refer to the information on how to configure the reference with mkarv -h.
+Next, run mkarv on the JSON files to generate the interactive web viewer. By default, SRR891268 will be used as the reference sample in the viewer. You can specify a different reference when you built your viewer instance, refer to the information on how to configure the reference with mkarv -h.
 
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