Changes between Version 33 and Version 34 of SOPs/atac_Seq


Ignore:
Timestamp:
02/18/21 09:41:55 (4 years ago)
Author:
thiruvil
Comment:

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  • SOPs/atac_Seq

    v33 v34  
    120120=== [=#call_peaks Call peaks] ===
    121121
    122 MACS v2 works well for this.
     122MACS v2 is applicable for ATAC-Seq using the appropriate options/parameters.
    123123
    124124If using the 'BAMPE' option with paired-end reads, let MACS run the pileup and calculate 'extsize'; ask MACS to keep only 1 read if duplicates are present.