Changes between Version 42 and Version 43 of SOPs/atac_Seq


Ignore:
Timestamp:
06/01/21 11:56:11 (4 years ago)
Author:
byuan
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • SOPs/atac_Seq

    v42 v43  
    8686
    8787
    88   * The [https://www.encodeproject.org/atac-seq/#standards ENCODE project] has [[https://www.encodeproject.org/atac-seq/#standards|recommendations]] on TSS enrichment scores, fragment size distribution. You can also download ENCODE pipeline and analyze your samples with the pipeline. Its QC output html file includes quality controls results and interpretation. It also check on uniqueness of reads to estimates the library complexity. 
     88  * The [https://www.encodeproject.org/atac-seq/#standards ENCODE project] has [[https://www.encodeproject.org/atac-seq/#standards|recommendations]] on TSS enrichment scores, fragment size distribution. You can also download ENCODE pipeline and analyze your samples with the pipeline. Its QC output html file includes quality controls results and their interpretation. It also estimates the library complexity based the uniqueness of reads. 
    8989
    9090  * In addition to do varies quality controls, [[https://www.sciencedirect.com/science/article/pii/S240547122030079X | ataqv]] summarizes QC results into an interactive html page, which also allows you to view multiple samples together.