Changes between Version 45 and Version 46 of SOPs/atac_Seq


Ignore:
Timestamp:
06/01/21 13:29:19 (4 years ago)
Author:
byuan
Comment:

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  • SOPs/atac_Seq

    v45 v46  
    130130MACS v2 is applicable for ATAC-Seq using the appropriate options/parameters.
    131131
    132 MACS2 [[ https://github.com/alexyfyf/atac_nf/blob/7f996b7de0e349c5a10dbbd75b2c266339517a3b/atac.nf#L341 | commands used in ATAC-seq review paper ]]: [[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1929-3 | From reads to insight: a hitchhiker’s guide to ATAC-seq data analysis]]
     132MACS2 [[ https://github.com/alexyfyf/atac_nf/blob/7f996b7de0e349c5a10dbbd75b2c266339517a3b/atac.nf#L341|commands used in ATAC-seq review paper ]] : [[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1929-3 | From reads to insight: a hitchhiker’s guide to ATAC-seq data analysis]]
    133133{{{
    134134    # convert bam to bed