Changes between Version 56 and Version 57 of SOPs/atac_Seq

Timestamp:

06/09/21 15:09:00 (4 years ago)

Author:

thiruvil

Comment:

--

SOPs/atac_Seq

@@ -186 +186 @@
 }}}
 
+==== Other Tools ====
+
 [[https://github.com/LiuLabUB/HMMRATAC | HMMRATAC]] is another piece of software for ATAC-seq peak-calling.
+
+=== [=#Asessing Assessing Peak Calls ] ===
 
 Calculate the FRiP score (with /nfs/BaRC_Public/BaRC_code/Python/calculate_FRiP_score/calculate_FRiP_score.py).  The FRiP (Fraction of reads in peaks) score describes the fraction of all mapped reads that fall into the called peak regions.  The higher the score, the better, preferably over 0.3, according to [https://www.encodeproject.org/atac-seq/#standards ENCODE].