Changes between Version 62 and Version 63 of SOPs/atac_Seq


Ignore:
Timestamp:
06/15/21 12:47:46 (4 years ago)
Author:
byuan
Comment:

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  • SOPs/atac_Seq

    v62 v63  
    189189       * BAMPE format: there is no special format for BAMPE - MACS will treat PE reads as coming from the same fragment, from the manual,
    190190       * "If the BAM file is generated for paired-end data, MACS will only keep the left mate(5' end) tag. However, when format BAMPE is specified, MACS will use the real fragments inferred from alignment results for reads pileup."
    191 
    192 {{{
     191{{{
     192
    193193macs2 callpeak -f BAMPE -t NFR.bam  --keep-dup all -B -q 0.01 -g mm -n MACS_ATACSeq_Peaks
    194194}}}