Changes between Version 63 and Version 64 of SOPs/atac_Seq

Timestamp:

06/15/21 13:04:04 (4 years ago)

Author:

byuan

Comment:

--

SOPs/atac_Seq

@@ -98 +98 @@
 #    --mitochondrial-reference-name: name for the mitochondrial DNA
 
-ataqv --peak-file sample1_peak.bed --name sample1 --metrics-file sample1.ataqv.json.gz --excluded-region-file /nfs/genomes/human_hg38_dec13/anno/hg38-blacklist.v2.bed.gz --tss-file hg38.tss.refseq.bed.gz --ignore-read-groups human sample1.bam > sample1.ataqv.out”
+ataqv --peak-file sample1_peak.bed --name sample1 --metrics-file sample1.ataqv.json.gz --excluded-region-file /nfs/genomes/human_hg38_dec13/anno/hg38-blacklist.v2.bed.gz --tss-file hg38.tss.refseq.bed.gz --ignore-read-groups human sample1.bam > sample1.ataqv.out
 
 }}}