Changes between Version 70 and Version 71 of SOPs/atac_Seq


Ignore:
Timestamp:
07/08/21 15:37:54 (4 years ago)
Author:
byuan
Comment:

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  • SOPs/atac_Seq

    v70 v71  
    2121{{{
    2222# --fastqc                Run FastQC in the default mode on the FastQ file once trimming is complete.
    23 # --nextera               Adapter sequence to be trimmed is the first 12bp of the Nextera adapter
    24                         'CTGTCTCTTATA' instead of the default auto-detection of adapter sequence.
     23# --nextera               Nextera adapter is commonly used for ATAC-seq
     24                          Adapter sequence to be trimmed is the first 12bp of the Nextera adapter
     25                          'CTGTCTCTTATA' instead of the default auto-detection of adapter sequence.
    2526trim_galore --fastqc  -nextera --paired --length 30 -o clean_adaptor_folder read1.fq read2.fq
    2627}}}