Changes between Version 73 and Version 74 of SOPs/atac_Seq


Ignore:
Timestamp:
07/09/21 08:49:38 (4 years ago)
Author:
gbell
Comment:

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  • SOPs/atac_Seq

    v73 v74  
    1717=== [=#preprocess Pre-process reads] ===
    1818
    19   * Check adapter contamination with fastqc. Remove adapters with cutadapt or trim_galore:
     19  * Check adapter contamination with fastqc. Remove adapters with cutadapt or trim_galore.  Since many ATAC-seq experiments use the Nextera DNA Library Prep Kit, one commonly needs to trim Nextera adapters.
    2020
    2121{{{