Changes between Version 80 and Version 81 of SOPs/atac_Seq


Ignore:
Timestamp:
07/09/21 13:25:51 (4 years ago)
Author:
byuan
Comment:

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  • SOPs/atac_Seq

    v80 v81  
    8787{{{
    8888# USAGE: calculate_TSS_enrichment_score.py --outdir OUTDIR --outprefix OUTPREFIX --fastq1 FASTQ1 --tss TSS_BED --chromsizes CHROMSIZES --bam BAM
     89# The chromosomes(contigs) in the alignment file (.bam) should be the same as tss (.bed) file.
    8990
    9091./calculate_TSS_enrichment_score.py --outdir OUT_QC_1 --outprefix Sample_A --fastq1 ATACseq_reads.fq.gz --tss TSS.hg38.bed --chromsizes chromInfo.hg38.txt --bam ATACseq_mapped_reads.bam >| Sample_A.TSS_enrichment_score.txt