Changes between Version 81 and Version 82 of SOPs/atac_Seq


Ignore:
Timestamp:
07/09/21 13:28:26 (4 years ago)
Author:
byuan
Comment:

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  • SOPs/atac_Seq

    v81 v82  
    8787{{{
    8888# USAGE: calculate_TSS_enrichment_score.py --outdir OUTDIR --outprefix OUTPREFIX --fastq1 FASTQ1 --tss TSS_BED --chromsizes CHROMSIZES --bam BAM
    89 # The chromosomes(contigs) in the alignment file (.bam) should be the same as tss (.bed) file.
     89# The alignment file (.bam) and tss (.bed) file should have the same chromosomes(contigs).
    9090
    9191./calculate_TSS_enrichment_score.py --outdir OUT_QC_1 --outprefix Sample_A --fastq1 ATACseq_reads.fq.gz --tss TSS.hg38.bed --chromsizes chromInfo.hg38.txt --bam ATACseq_mapped_reads.bam >| Sample_A.TSS_enrichment_score.txt