Changes between Version 6 and Version 7 of SOPs/callingSNPs


Ignore:
Timestamp:
08/07/13 13:06:45 (12 years ago)
Author:
thiruvil
Comment:

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  • SOPs/callingSNPs

    v6 v7  
    5555 #GRCh37.71.genome : Homo_sapiens
    5656 #GRCh37.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/
    57  #GRCh37.71.MT.codonTable = Vertebrate_Mitochondrial (non-standard!)
     57 #GRCh37.71.MT.codonTable = Vertebrate_Mitochondrial
    5858
    5959  snpEff GRCh37.71 variants.vcf > variants.annotated.vcf