Changes between Version 25 and Version 26 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
06/03/16 14:27:19 (9 years ago)
Author:
thiruvil
Comment:

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  • SOPs/chip_seq_peaks

    v25 v26  
    33 
    44=== Basic Approach ===
    5  * For each sample map the reads to the appropriate genome (eg.Bowtie2).
    6  * Call peaks (eg. MACS).  It's essential a control was used in the experimental design, eg. IgG or input, input is preferred over IgG.
     5 * For each sample map the reads to the appropriate genome (eg.using Bowtie2).
     6 * Call peaks (eg. MACS).  Peaks can be called without control, however, it's highly recommended a control was used in the experimental design, eg. IgG or input, input is preferred over IgG.
    77
    88=== Reviews ===