Changes between Version 26 and Version 27 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
06/03/16 14:30:36 (9 years ago)
Author:
thiruvil
Comment:

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  • SOPs/chip_seq_peaks

    v26 v27  
    267267
    268268  * Method 1: Run IDR to identify reproducible peaks
    269   * Method 2: Use MACS2 [[https://github.com/taoliu/MACS/wiki/Call-differential-binding-events | bdgdiff]].  bedGraph (.bdg) files are required.
     269  * Method 2: Use [[https://github.com/taoliu/MACS/wiki/Call-differential-binding-events | MACS2 bdgdiff]] to call differential binding.  bedGraph (.bdg) files are required.
    270270  * Method 3: Intersect bound regions (peaks)
    271271    * This binary comparison asks simply, "Is each peak in sample A present in sample B (and vice versa)?"