Changes between Version 27 and Version 28 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
06/16/16 11:24:43 (9 years ago)
Author:
gbell
Comment:

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  • SOPs/chip_seq_peaks

    v27 v28  
    179179# IDR <= 0.05 for < 100K pre-IDR peaks for large genomes (human/mouse)
    180180# IDR <= 0.01 or 0.02 for ~15K to 40K peaks in smaller genomes such as worm
     181# awk note: $NF refers to the last data column which (in the *overlapped-peaks.txt file) is the IDR
    181182
    182183awk '{ if($NF < 0.05) print $0 }' rep1_vs_rep2_IDR-overlapped-peaks.txt > rep1_vs_rep2_conserved_peaks_by_IDR.txt