Changes between Version 29 and Version 30 of SOPs/chip_seq_peaks
- Timestamp:
- 08/17/16 13:09:23 (8 years ago)
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SOPs/chip_seq_peaks
v29 v30 19 19 === Step 2: Perform strand cross correlation analysis === 20 20 21 * The goal of this step is to asses the quality of the IP and to estimate the fragment size of the immunoprecipitated DNA.21 * The goal of this step is to assess the quality of the IP and to estimate the fragment size of the immunoprecipitated DNA. 22 22 * For a detailed explanation on strand cross-correlation analysis see box 2 of this paper ([[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326|Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data ]]). 23 23 {{{