Changes between Version 30 and Version 31 of SOPs/chip_seq_peaks


Ignore:
Timestamp:
08/17/16 13:54:31 (8 years ago)
Author:
gbell
Comment:

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  • SOPs/chip_seq_peaks

    v30 v31  
    2222 * For a detailed explanation on strand cross-correlation analysis see box 2 of this paper ([[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326|Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data ]]).
    2323{{{
    24 /nfs/BaRC_Public/phantompeakqualtools/run_spp.R -c=TreatmentIP.bam -savp -out=TreatmentIP.run_spp.out
     24/nfs/BaRC_Public/phantompeakqualtools/run_spp.R -c=TreatmentIP.bam -savp=TreatmentIP.spp.pdf -out=TreatmentIP.run_spp.out
    2525}}}
    2626